About codonPhyML
codonPhyML uses Markovian codon models of evolution in phylogeny reconstruction. Given a set of species characterized by their DNA sequences as input, codonPhyML will return the phylogenetic tree that best describes their...
codonPhyML uses Markovian codon models of evolution in phylogeny reconstruction. Given a set of species characterized by their DNA sequences as input, codonPhyML will return the phylogenetic tree that best describes their evolutionary relationship. Our paper describing codonPhyML has been published in the journal "Molecular Biology and Evolution" (MBE). For more details, follow the link: . codonPhyML is on the cover of MBE! Check this out (August 2013): .
For the multimodel version of CodonPhyML, please use the 'codonphyml_multi.tgz' tarball.
Features
- Markovian codon models of evolution: Goldman & Yang 1994, Muse & Gaut 1994, Kosiol et al 2007, Schneider et al 2005, Yap et al 2010
- NNI and SPR tree topology search heuristic
- substitution rate parameters estimated by maximum likelihood
- multicore support through OpenMP
- likelihood comparable across different models (i.e. AA, NT and CODON)
Previous Versions
Here you can find the changelog of codonPhyML since it was posted on our website on 2015-04-25 03:00:00.
The latest version is 24 and it was updated on 2024-04-19 23:53:27. See below the changes in each version.
codonPhyML version 24
Updated At: 2014-07-24
codonPhyML version codonphyml
Updated At: 2011-08-17
Changes: Several fixes and updates
Disclaimer
External Download
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