codonPhyML24 - Download
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Publisher Description
codonPhyML uses Markovian codon models of evolution in phylogeny reconstruction. Given a set of species characterized by their DNA sequences as input, codonPhyML will return the phylogenetic tree that best describes their evolutionary relationship. Our paper describing codonPhyML has been published in the journal "Molecular Biology and Evolution" (MBE). For more details, follow the link: . codonPhyML is on the cover of MBE! Check this out (August 2013): .
For the multimodel version of CodonPhyML, please use the 'codonphyml_multi.tgz' tarball.
- Markovian codon models of evolution: Goldman & Yang 1994, Muse & Gaut 1994, Kosiol et al 2007, Schneider et al 2005, Yap et al 2010
- NNI and SPR tree topology search heuristic
- substitution rate parameters estimated by maximum likelihood
- multicore support through OpenMP
- likelihood comparable across different models (i.e. AA, NT and CODON)
About codonPhyML
This Computer program is available in English. It was last updated on 02 November, 2026. codonPhyML is compatible with the following operating systems: Linux, Mac, Windows.
The company that develops codonPhyML is anisimova. The latest version released by its developer is 24.
The download we have available for codonPhyML has a file size of 2.6 MB. Just click the green Download button above to start the downloading process. The program is listed on our website since 2014-07-24 and was downloaded 0 times. We have already checked if the download link is safe, however for your own protection we recommend that you scan the downloaded software with your antivirus. Your antivirus may detect the codonPhyML as malware if the download link is broken.
How to install codonPhyML on your Windows device:
- Click on the Download button on our website. This will start the download from the website of the developer.
- Once the codonPhyML is downloaded click on it to start the setup process (assuming you are on a desktop computer).
- When the installation is finished you should be able to see and run the program.
Version History
version 24
posted on 2014-07-24
version codonphyml
posted on 2011-08-17
Several fixes and updates
Disclaimer
External Download
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